Also I was wondering if I do find some parasites in her what would I do to fix that problem if the problem needs to be fixed. I have access to Microscopes at school maybe I can try to look on my own.
Again, I like the initiative you are taking with your new pet! The fact that you are asking good questions and looking for information beyond the basics is nice to see. Basics are good too!
Sadly, you can't run down to your local drug store or pet shop to buy deworming medications for WallFlower. The proper drugs need to be prescribed by a veterinarian. If you go that route, and I think you should just for peace of mind, the fecal sample needs to be fresh for the doctor to work with. No dried-up lumps of poo! LOL! Most deworming meds for reptiles are easy to give (liquid, oral) and are fairly safe too. I think the biggest side effect I've noticed when I've dewormed my posse is that they go off food for a few days. This is not a big deal if they get plenty of water.
That said, I think doing fecals for your own personal growth or enrichment is a fabulous idea. A book you may want to consider is "Understanding Reptile Parasites" By Roger J. Klingenberg D.V.M. It tells you about the common reptile worms, lifespan, modes of delivery etc. I've seen it at my local pet shops and it's certainly available through online retailers. I seem to remember that it's not very expensive either.
I agree with Jordon's comments about WallFlowers eyes. Chameleons bulge their eyes in and out when they are shedding or cleaning them. Normal. If you notice she does that during a misting session, you can always prolong the session until she's finished. It won't hurt.
I also agree that looking at jacksonii caresheets may be helpful to you. I haven't worked extensively with either the jax or fuelli's to say for sure, but I think there would be some similarities between them.
And finally, you can certainly put her outside on warm rainy days. Humidity is usually excellent on days like that and she'll benefit from the extra water. Just make sure she can get out of the rain if she wants. Cloudy days are also good as there is residual UVB rays getting through the clouds which also helps keep her healthy. She may have to come indoors on the rainy nights depending on how low the temperatures drop.
Red flaps? No idea! I assume normal colours?!?! Could be that she is receptive or gravid as well.
Have fun!
Trace